BtaEX0016139 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017291 | GPR108
Description
Bos taurus G protein-coupled receptor 108 (GPR108), mRNA. [Source:RefSeq mRNA;Acc:NM_001075333]
Coordinates
chr7:18971342-18972194:-
Coord C1 exon
chr7:18972119-18972194
Coord A exon
chr7:18971577-18971650
Coord C2 exon
chr7:18971342-18971479
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATCCATCCACCCACCTCCAGATC
3' ss Score
8.08
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTACAACGTCTTCAAGATCCACTGGCTCATGGCAGCCCTGACTTTCACCAAGAGCGTCTCTCTCCTCTTCCACAGT
Seq A exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCTGTCATGCACTACATCACGCATCT
Seq C2 exon
GCTGAAAGGTGCCCTCCTCTTCATCACCATTGCCTTGATCGGCTCCGGCTGGGCCTTCGTCAAGTATGTGCTGTCAGACAAGGAGAAGAAGATCTTTGGGATAGTGATCCCACTGCAGGTGCCTAGGGAGGTCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017291_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(15.3=100)
A:
PF068148=Lung_7-TM_R=FE(14.7=100)
C2:
PF068148=Lung_7-TM_R=FE(24.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACTTTCACCAAGAGCG
R:
CTCCCTAGGCACCTGCAGT
Band lengths:
171-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development