MmuEX0021635 @ mm9
Exon Skipping
Gene
ENSMUSG00000005823 | Gpr108
Description
G protein-coupled receptor 108 [Source:MGI Symbol;Acc:MGI:1925558]
Coordinates
chr17:57376629-57377349:-
Coord C1 exon
chr17:57377274-57377349
Coord A exon
chr17:57376847-57376920
Coord C2 exon
chr17:57376629-57376746
Length
74 bp
Sequences
Splice sites
3' ss Seq
ATGCATCTGCTCACCTCCAGATC
3' ss Score
8.64
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATACAGTGTCTTCAAGATCCACTGGCTCATGGCAGCCCTGGCGTTCACCAAGAGTGTCTCCCTACTCTTCCACAGC
Seq A exon
ATCAACTACTACTTCATCAACAGCCAGGGCCACCCCATCGAAGGCCTCGCGGTCATGCACTATATCACACACCT
Seq C2 exon
GCTGAAGGGCGCCCTTCTCTTCATCACCATCGCCTTGATCGGCTCAGGCTGGGCCTTTGTGAAGTATATGCTGTCGGACAAGGAGAAGAAGATTTTTGGCATTGTGATTCCCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005823_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(8.6=100)
A:
PF068148=Lung_7-TM_R=FE(8.3=100)
C2:
PF068148=Lung_7-TM_R=FE(13.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGATCCACTGGCTCATGGC
R:
GCAGGGGAATCACAATGCCAA
Band lengths:
180-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: