HsaEX0029061 @ hg19
Exon Skipping
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:26565]
Coordinates
chr12:54856955-54867386:-
Coord C1 exon
chr12:54867330-54867386
Coord A exon
chr12:54865017-54865061
Coord C2 exon
chr12:54856955-54857081
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACACTTTTGTTTTTTCCAGCAC
3' ss Score
9.57
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GTTGCTGGGGCTTGCGTGGGAGGAAGGTGACTGTGAGGAAGGTGTGTGTCCACCGAG
Seq A exon
CACTTGGATTCAGCTTCTTCATTTCCAACATGGAAGAAACTTACA
Seq C2 exon
AATCATCCTGATGTTGCAAGCAAATTGGCTACTTGTCCCTTCAATGCTCGCCACCAGGTTCCTCGAGCTGAAATTAGTCATCATATCTCAAGCTGTGATGACAGAAGTTGTATTGAGCAAGATGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.417 C2=0.023
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF052537=zf-U11-48K=WD(100=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGAAGGTGTGTGTCCAC
R:
TGCTCAATACAACTTCTGTCATCACA
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)