RnoEX0040603 @ rn6
Exon Skipping
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145044301-145049200:-
Coord C1 exon
chr7:145049100-145049200
Coord A exon
chr7:145047070-145047114
Coord C2 exon
chr7:145044301-145044401
Length
45 bp
Sequences
Splice sites
3' ss Seq
AACCATGCTTTTCCCTCTAGCAC
3' ss Score
8.28
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
CACAGGAAGTGCGGCCCCACCCTGGCATCAGGCCGGAAGTGGGCGTTGCCGGGGCCTGGCTGTGAGGCGAAGTCGGCGGTGGGGAGAGCTTCTGGACTGAG
Seq A exon
CACTTGAACAGGACTCCTTTGCCATCAGCATGGAAGACACTTACA
Seq C2 exon
TCGACTCCCTGGACCCTGAAAAGTTACTACAGTGCCCCTATGATAAAAACCACCAGATCAGGGCCTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831-'0-5,'0-3,7-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF052537=zf-U11-48K=WD(100=79.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCAGGCCGGAAGTGG
R:
GGCCCTGATCTGGTGGTTTTT
Band lengths:
142-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]