HsaEX0029061 @ hg38
Exon Skipping
Gene
ENSG00000170627 | GTSF1
Description
gametocyte specific factor 1 [Source:HGNC Symbol;Acc:HGNC:26565]
Coordinates
chr12:54465067-54473599:-
Coord C1 exon
chr12:54473546-54473599
Coord A exon
chr12:54471233-54471277
Coord C2 exon
chr12:54465067-54465167
Length
45 bp
Sequences
Splice sites
3' ss Seq
CACACTTTTGTTTTTTCCAGCAC
3' ss Score
9.57
5' ss Seq
ACAGTATGT
5' ss Score
6.05
Exon sequences
Seq C1 exon
GCTGGGGCTTGCGTGGGAGGAAGGTGACTGTGAGGAAGGTGTGTGTCCACCGAG
Seq A exon
CACTTGGATTCAGCTTCTTCATTTCCAACATGGAAGAAACTTACA
Seq C2 exon
CCGACTCCCTGGACCCTGAGAAGCTATTGCAATGCCCCTATGACAAAAACCATCAAATCAGGGCTTGCAGGTTTCCTTATCATCTTATCAAGTGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170627_MULTIEX2-1/4=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.583 C2=0.024
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF052537=zf-U11-48K=WD(100=79.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCGTGGGAGGAAGGTGA
R:
AGATGATAAGGAAACCTGCAAGCC
Band lengths:
132-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development