Special

HsaEX0029165 @ hg19

Exon Skipping

Gene
Description
granzyme H (cathepsin G-like 2, protein h-CCPX) [Source:HGNC Symbol;Acc:4710]
Coordinates
chr14:25075686-25076953:-
Coord C1 exon
chr14:25076818-25076953
Coord A exon
chr14:25076355-25076612
Coord C2 exon
chr14:25075686-25075952
Length
258 bp
Sequences
Splice sites
3' ss Seq
TCTTGCTTCTTCCCCACCAGCTG
3' ss Score
8.51
5' ss Seq
AAGGTTGGG
5' ss Score
4.94
Exon sequences
Seq C1 exon
CTCCATAAATGTCACCTTGGGGGCCCACAATATCAAGGAACAGGAGCGGACCCAGCAGTTTATCCCTGTGAAAAGACCCATCCCCCATCCAGCCTATAATCCTAAGAACTTCTCCAACGACATCATGCTACTGCAG
Seq A exon
CTGGAGAGAAAGGCCAAGTGGACCACAGCTGTGCGGCCTCTCAGGCTACCTAGCAGCAAGGCCCAGGTGAAGCCAGGGCAGCTGTGCAGTGTGGCTGGCTGGGGTTATGTCTCAATGAGCACTTTAGCAACCACACTGCAGGAAGTGTTGCTGACAGTGCAGAAGGACTGCCAGTGTGAACGTCTCTTCCATGGCAATTACAGCAGAGCCACTGAGATTTGTGTGGGGGATCCAAAGAAGACACAGACCGGTTTCAAG
Seq C2 exon
GGGGACTCCGGGGGGCCCCTCGTGTGTAAGGACGTAGCCCAAGGTATTCTCTCCTATGGAAACAAAAAAGGGACACCTCCAGGAGTCTACATCAAGGTCTCACACTTCCTGCCCTGGATAAAGAGAACAATGAAGCGCCTCTAACAGCAGGCATGAGACTAACCTTCCTCTGGGCCTGACCATCTCTGGGACAGAGGCAAGAATCCCCAAGGGGTGGGCAGTCGGGGTTGCAGGACTGTAATAAATGGATCTCTGGTGTAAATATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100450-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

Show PDB structure
Features
Disorder rate (Iupred):
  C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0008921=Trypsin=FE(20.5=100)
A:
PF0008921=Trypsin=FE(38.8=100)
C2:
PF0008921=Trypsin=PD(17.8=81.2)


Main Inclusion Isoform:


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
HIGH PSI
(CFD)
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGACCCAGCAGTTTATC
R:
CCTTGGGGATTCTTGCCTCTG
Band lengths:
305-563
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development