BtaEX0000394 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8M2]
Coordinates
chr21:35206045-35208959:-
Coord C1 exon
chr21:35208875-35208959
Coord A exon
chr21:35206568-35206825
Coord C2 exon
chr21:35206045-35206188
Length
258 bp
Sequences
Splice sites
3' ss Seq
CTCTTGTCTCTTCCCATCAGCTG
3' ss Score
8.62
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCAGCTCTGACCTGGGCAAATCTTCTGGAAGATGCAGCTACTCCTGCTCCTGATGGCCTTTCTTCTGCCTCCTGGGCTGGGAGAG
Seq A exon
CTGGAGAGAAAGGCCAAGCAGACATCAGCTGTGAAGCCCCTTAGTCTGCCCAAGGCCAAGGCCCAGGTGAAGCCAGGAGAAGTGTGCAGTCTGGCCGGCTGGGGGAAGGTGGCCCTGGGCACTCCAGCCACCACCCTGCAGGAGGTAGAGCTGACGGTTCAGGAGGATCGGGTGTGTGAATCACTCAACCCCAGGAACTACAGTCGGGCCACCCAGATTTGTGTCGGGGACCCAAGGAAGGTGAAAACCGGCTTCAAG
Seq C2 exon
GGTGACTCCGGTGGACCCCTCGTGTGTAAAAAAGTGGTCCATGGTATTTTCTCCTATGGAAAGACGAATGGGACACCTCCAGGAGTCTTCACCCAGGTCTCACACTTCCTACCCTGGATAAAGAGAACAATGAAGCACCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010828_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=FE(38.8=100)
C2:
PF0008921=Trypsin=PD(17.8=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGACCTGGGCAAATC
R:
TTAGAGGTGCTTCATTGTTCTCT
Band lengths:
228-486
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development