BtaEX0000392 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B8M2]
Coordinates
chr21:35206045-35208959:-
Coord C1 exon
chr21:35208875-35208959
Coord A exon
chr21:35207692-35207852
Coord C2 exon
chr21:35206045-35206188
Length
161 bp
Sequences
Splice sites
3' ss Seq
TCCATCTCCCCATCTTTCAGCCT
3' ss Score
8.59
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCAGCTCTGACCTGGGCAAATCTTCTGGAAGATGCAGCTACTCCTGCTCCTGATGGCCTTTCTTCTGCCTCCTGGGCTGGGAGAG
Seq A exon
CCTTTTCTTTCAGAGGAGATCATTGGGGGCCATGAGGCCAAGCCCCACTCCCGCCCCTACATGGCTTTCGTTCAGTTTCTGGGTGAGAAGAGTTGGAAGAGGTGTGGCGGTGTTCTCATACAAAAAGACTTTGTTCTGACAGCTGCTCACTGCAGAGGAAG
Seq C2 exon
GGTGACTCCGGTGGACCCCTCGTGTGTAAAAAAGTGGTCCATGGTATTTTCTCCTATGGAAAGACGAATGGGACACCTCCAGGAGTCTTCACCCAGGTCTCACACTTCCTACCCTGGATAAAGAGAACAATGAAGCACCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010828_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.5=87.0)
C2:
PF0008921=Trypsin=PD(17.8=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCTGACCTGGGCAAATC
R:
AGAGGTGCTTCATTGTTCTCTT
Band lengths:
226-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development