RnoEX0001691 @ rn6
Exon Skipping
Gene
ENSRNOG00000049074 | AABR07017958.1
Description
granzyme N [Source:NCBI gene;Acc:691668]
Coordinates
chr15:35130741-35132452:-
Coord C1 exon
chr15:35132398-35132452
Coord A exon
chr15:35131201-35131351
Coord C2 exon
chr15:35130741-35130876
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTTTAATTAAAGAGG
3' ss Score
3.12
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
ATGCCACCTGTCCTGATTCTTCTGACCCTACTTCTGCCTCTTGAAGCTGGAGCAG
Seq A exon
AGGAGATCATCGGGGGCCATGAAGTCAAGCCCCACTCCTACCCCTACATGGCGTTTATTCAGTCTGTGAAAGCGGACGGAAATATCAGTTACTGCGGAGGCTTCCTGGTTCAAGACTACTTTGTGCTGACGGCTGCTCACTGCGAAGGAGA
Seq C2 exon
ATCAATGACAGTCATGCTGGGGGCCCACAACATCAAGGCTAAGGAGGATACCCAGCAAATCATCTCTGTGGAAAAAGCCATCAGCCATCCAGCTTATAATAAAGTAGATTATTCCTACGATATCATGCTATTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049074_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.3=90.6)
C2:
PF0008921=Trypsin=FE(21.8=100),PF105474=P22_AR_N=PU(34.5=82.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCACCTGTCCTGATTCTTC
R:
CTTCAATAGCATGATATCGTAGGAAT
Band lengths:
190-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]