HsaEX6070854 @ hg38
Exon Skipping
Gene
ENSG00000100450 | GZMH
Description
granzyme H [Source:HGNC Symbol;Acc:HGNC:4710]
Coordinates
chr14:24607612-24609658:-
Coord C1 exon
chr14:24609559-24609658
Coord A exon
chr14:24608265-24608412
Coord C2 exon
chr14:24607612-24607747
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTTCCAGTCTTTCCTTTCAGAGG
3' ss Score
9.43
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
Exon sequences
Seq C1 exon
GGAGTCAACACCAACAGCTCTGACCTGGGCAGCCTTCCTGAGAAAATGCAGCCATTCCTCCTCCTGTTGGCCTTTCTTCTGACCCCTGGGGCTGGGACAG
Seq A exon
AGGAGATCATCGGGGGCCATGAGGCCAAGCCCCACTCCCGCCCCTACATGGCCTTTGTTCAGTTTCTGCAAGAGAAGAGTCGGAAGAGGTGTGGCGGCATCCTAGTGAGAAAGGACTTTGTGCTGACAGCTGCTCACTGCCAGGGAAG
Seq C2 exon
CTCCATAAATGTCACCTTGGGGGCCCACAATATCAAGGAACAGGAGCGGACCCAGCAGTTTATCCCTGTGAAAAGACCCATCCCCCATCCAGCCTATAATCCTAAGAACTTCTCCAACGACATCATGCTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100450-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(21.5=94.0)
C2:
PF0008921=Trypsin=FE(20.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAACACCAACAGCTCT
R:
GCAGTAGCATGATGTCGTTGGA
Band lengths:
234-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains