RnoEX0001690 @ rn6
Exon Skipping
Gene
ENSRNOG00000049074 | AABR07017958.1
Description
granzyme N [Source:NCBI gene;Acc:691668]
Coordinates
chr15:35129736-35130888:-
Coord C1 exon
chr15:35130741-35130888
Coord A exon
chr15:35130268-35130528
Coord C2 exon
chr15:35129736-35129879
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTCTTCCTTATCAGCTG
3' ss Score
9.14
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
CTCTCTGCACAGATCAATGACAGTCATGCTGGGGGCCCACAACATCAAGGCTAAGGAGGATACCCAGCAAATCATCTCTGTGGAAAAAGCCATCAGCCATCCAGCTTATAATAAAGTAGATTATTCCTACGATATCATGCTATTGAAG
Seq A exon
CTGAAGAGCAAGGCCAAGAGAACTAAAGCTGTCAGTACCCTCATGTTGCCCCAGAGCGATGCCCAGGTTAAGCCGGGGGATGTGTGTCATGTGGCTGGCTGGGGGTTAACGTCCATCAACGGCACTAAAGTATCTTCCTGCCTACGAGAGGCTGAACTGATCATTCAGGAGGACCAGGAATGCGAAAAAATTTTCTACAACTATTTCAAGACCATACAGATTTGTGCTGGAGACCCAAACAATGTACAGGATGCTTCAAAG
Seq C2 exon
GGTGACTCCGGGGGACCCCTCGTGTGTGACAACAGAGCCTATGGAGTTATAGCCTACGGGAAAAAAGGGGAAATCTCTTCAGGAGTCTTCACCAAGGTTGTGTACTTCCTGCCGTGGATAAGCAGAAACATGAAGGTCCTCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049074-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(21.8=100),PF105474=P22_AR_N=PU(34.5=82.0)
A:
PF0008921=Trypsin=FE(38.2=100),PF105474=P22_AR_N=PD(63.9=87.4)
C2:
PF0008921=Trypsin=PD(17.3=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCACAGATCAATGACAGT
R:
TTAGAGGACCTTCATGTTTCTGCT
Band lengths:
292-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]