MmuEX6041691 @ mm9
Exon Skipping
Gene
ENSMUSG00000022156 | Gzme
Description
granzyme E [Source:MGI Symbol;Acc:MGI:109265]
Coordinates
chr14:56736456-56737670:-
Coord C1 exon
chr14:56737535-56737670
Coord A exon
chr14:56737088-56737348
Coord C2 exon
chr14:56736456-56736706
Length
261 bp
Sequences
Splice sites
3' ss Seq
TCCTCCCTCTTCCCTATCAGCTG
3' ss Score
9.11
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GACAATGACAGTCACACTGGGGGCCCACAACATCAAGGCTAAGGAGGAGACACAGCAGATCATCCCTGTGGCAAAAGCCATTCCCCATCCAGATTATAATGCCACTGCCTTCTTCAGTGACATCATGCTGTTAAAG
Seq A exon
CTGGAGAGTAAGGCCAAGAGAACTAAAGCTGTGAGACCCCTCAAGTTGCCCAGACCCAATGCCCGGGTGAAGCCAGGGGATGTGTGCAGTGTGGCTGGCTGGGGGTCAAGGTCCATCAATGACACTAAAGCATCTGCCCGCCTGCGAGAGGCTCAACTGGTCATCCAGGAGGATGAGGAATGCAAAAAACGTTTCCGACACTACACTGAGACCACAGAGATTTGTGCTGGAGACTTGAAGAAAATAAAGACTCCTTTCAAG
Seq C2 exon
GGTGACTCTGGGGGACCCCTCGTGTGTGACAACAAAGCTTATGGACTTTTAGCCTATGCAAAAAACAGGACAATCTCTTCAGGAGTCTTCACTAAGATTGTGCACTTCCTGCCGTGGATAAGCAGGAACATGAAGCTGCTCTAACAGGTGTTAAACCACCCGTGCCTGACCAGCCTGTCCGACCTCAGGCAAGAACCACGTGGAGTGGGCAGCAAAGAATGAAAATTCACAATAAATAACCTCCAGACTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022156-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.9=100)
A:
PF0008921=Trypsin=FE(38.1=100)
C2:
PF0008921=Trypsin=PD(17.3=81.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCATCCCTGTGGCAAA
R:
TCATTCTTTGCTGCCCACTCC
Band lengths:
304-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: