HsaEX0029665 @ hg19
Exon Skipping
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65235549-65241299:-
Coord C1 exon
chr17:65241264-65241299
Coord A exon
chr17:65239900-65239955
Coord C2 exon
chr17:65235549-65235605
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTCTATTTGCCTCAGGAT
3' ss Score
8.68
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CAAGTGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq A exon
GATTTGGATGAAGTAATGGATCACTAATGAACTACAGTGCTGGTGAGATGTGTAAG
Seq C2 exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTGATACCCAGTGCAGTGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTGGATCCAAGATGGCGT
R:
TTCACTGCACTGGGTATCACC
Band lengths:
87-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)