BtaEX0016892 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63886494-63928148:-
Coord C1 exon
chr19:63907406-63928148
Coord A exon
chr19:63906101-63906156
Coord C2 exon
chr19:63886494-63886721
Length
56 bp
Sequences
Splice sites
3' ss Seq
TACTTTTCTGTTTGCCTCAGGAA
3' ss Score
9.29
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CCGCGTACGCGGCGGCCCAGCGCCGGCGCTCGGGCCCCGGCCCGGGGAGCAGAAGCCCGCCGGCGGGCGGCGAGGGTCTGGGGCCGAAACCGACGCAGCAGCGCGCACAGACGAATCTGAGCGGCTCCTCGCCGCCGGCGCGGGAAGCCCGCGGCCGATCAGACGCAGACTTGGGGTGTCCGTCCGCCCCGGGGGGCGCCGGGGCCCGCGTGGACGCGAGGGGTGGGGGAAGGGAGGCCGGGAGCGGCGGCGGCCGCAGAGACCCGGAGCCCCGTTTTAAAGATGGGGGCGGATTTTAAACGCAAACAGCCGGCGGAGGGGAGGGGCCGCGCGGCAGGCGGCGGGCAACTTTCCGCGCCGGAGGTGCGGCCGGAGGGGCGGCGCCGGCGGAGGCGGGAGTCGGGGGCCGAGGGGAGTCACTTTAAAGGCTCTTTCTTACCCACAATGCTTTGTGGGGACGTTGACAAGTGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq A exon
GAATTGGATGAAGTAATTGATCACTAAAGAACTACAGTGCTGGTGAGATGTGTAAG
Seq C2 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAGAAGTCATGTGAACAAGCATGTGAATCACTGAAGAGGCAGGACTATGAGATGGCCCTCCAGCACTGCACAGAGGCCCTCCTTTCTCTTGGCCAGTACTCCATGGCCGACTTTACGGGGCCCTGTCCGCTGGAGATAGAGAGCATCAAGATCGAGAGTCTTCTTTATAGAATTGCCTCCTTTTTGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746_MULTIEX2-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACGTTGACAAGTGGATCC
R:
TGGAGGGCCATCTCATAGTCC
Band lengths:
144-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development