MmuEX6090691 @ mm10
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107547930-107555575:+
Coord C1 exon
chr11:107547930-107547981
Coord A exon
chr11:107549346-107549401
Coord C2 exon
chr11:107555519-107555575
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTGTTTGCTCCAGGAA
3' ss Score
11.59
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTTGTGGGGACGTTGACAAGTGGATCCAAGATGGCGTAGAAAGTAATGACAG
Seq A exon
GAACTGGATGAAGTAATTGATCACTAATGAACTACAGAGCCGGTGAGATGTGCAAG
Seq C2 exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTGTTACCCAGTGCAGTGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721-'0-12,'0-1,2-12=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGGGACGTTGACAAGTG
R:
TTCACTGCACTGGGTAACACC
Band lengths:
102-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types