BtaEX0016893 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63886494-63906200:-
Coord C1 exon
chr19:63906101-63906200
Coord A exon
chr19:63902164-63902220
Coord C2 exon
chr19:63886494-63886721
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATTCCTTCTCTCTCTTTCAGAAA
3' ss Score
13.28
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TATTGGTGTTGTACAGACACATTTTACTTTTCTGTTTGCCTCAGGAATTGGATGAAGTAATTGATCACTAAAGAACTACAGTGCTGGTGAGATGTGTAAG
Seq A exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTAATACCCAGTGCAGTGAACTGCAG
Seq C2 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAGAAGTCATGTGAACAAGCATGTGAATCACTGAAGAGGCAGGACTATGAGATGGCCCTCCAGCACTGCACAGAGGCCCTCCTTTCTCTTGGCCAGTACTCCATGGCCGACTTTACGGGGCCCTGTCCGCTGGAGATAGAGAGCATCAAGATCGAGAGTCTTCTTTATAGAATTGCCTCCTTTTTGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746_MULTIEX2-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGCTGGTGAGATGTGTA
R:
AGAGAAAGGAGGGCCTCTGTG
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development