RnoEX0041507 @ rn6
Exon Skipping
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95770154-95794910:+
Coord C1 exon
chr10:95770154-95770209
Coord A exon
chr10:95775366-95775422
Coord C2 exon
chr10:95794683-95794910
Length
57 bp
Sequences
Splice sites
3' ss Seq
GGCTGTTTTCTCTCTTTCAGAAA
3' ss Score
11.92
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAATTGGATGAAGTAATTGATCACTAATGAACTACAGAGCCGGTGAGATGTACAAG
Seq A exon
AAATTATAAAGAGCTCTGATGGGCGATTTGGGTGATACGCAGTGCAGTGAACTGCAG
Seq C2 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAGGTCATGTGAACAAGCGTGCGCGTCACTGCAGAGGCAGGACTATGACATGGCCCTCCAGCATTGCACAGACGCCCTGCTCTCTCTTGGCCAGTACTCCATGACAGACTTCGCAGGGCCGTGCCCAGTGGAGATTGAGCGCATCAAAATCGAGAGTCTTCTGTACAGAATTGCCTCATTCTTGCAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213_MULTIEX1-2/5=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134141=TPR_11=PU(80.5=94.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCCGGTGAGATGTACA
R:
GTCTGTGCAATGCTGGAGGG
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]