MmuEX0022718 @ mm9
Exon Skipping
Gene
ENSMUSG00000020721 | Helz
Description
helicase with zinc finger domain [Source:MGI Symbol;Acc:MGI:1925705]
Coordinates
chr11:107410660-107436479:+
Coord C1 exon
chr11:107410660-107410715
Coord A exon
chr11:107416833-107416889
Coord C2 exon
chr11:107436252-107436479
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGCTGTTCTCTCTTTTTCAGAAA
3' ss Score
11.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACTGGATGAAGTAATTGATCACTAATGAACTACAGAGCCGGTGAGATGTGCAAG
Seq A exon
AAATTATAAAGAGCTCTGATGGGCTATTTGGGTGTTACCCAGTGCAGTGAACTGCAG
Seq C2 exon
GATTTTTGTCCCTGAGTCATGGAAGACAGAAGAGCTGAAAGGTCATGTGAACAAGCGTGCGCGTCACTGCAGAGGCAGGACTATGACATGGCCCTCCAGCACTGCACCGACGCCCTGCTCTCTCTTGGCCAGTACTCCATGGCAGACTTCACAGGGCCGTGCCCGGTGGAGGTTGAGCGCATCAAAATTGAGAGTCTTCTTTACAGAATTGCCTCATTCTTGCAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020721_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAACTACAGAGCCGGTGAGA
R:
GTGCTGGAGGGCCATGTCATA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: