HsaEX0033012 @ hg19
Exon Skipping
Gene
ENSG00000187486 | KCNJ11
Description
potassium inwardly-rectifying channel, subfamily J, member 11 [Source:HGNC Symbol;Acc:6257]
Coordinates
chr11:17408130-17411192:-
Coord C1 exon
chr11:17410388-17411192
Coord A exon
chr11:17409565-17409623
Coord C2 exon
chr11:17408130-17409393
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAGCCATGCTGTCCCGCAAGGGC
3' ss Score
2.26
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
CCTCTCCTCGTGCGCCCCCCTCCCGCCGTCCTAGACCCCTGCCTAGCCCAGGTCGGTCTCCGCGGACCCACGGACGGACAGACAGACGGGAGGACGGCCAGCCGCGAGCGCCCGGGCGGCGGGAGGGGGCGGGGAGGCGACGGCCGTGGCGTGAGGAGCAGGAGCAGGTGCAGCGGCGGCGGCGGGCGGGGCCGGGACCCGGCGCGGAGCGGGAGCCGCGGCGCGGGCGGGCGGCAGGGACCGGGAGGCCGCGACTCGGAGTCAGCCCCGCCGGGTCGCGCGCAGGTCCGGGGAGCCGCGGTTGAGCCGGGTGGGGTGGTGACTCCAGAGAACGCAGGATCCCAAGGAGACAGAGAGGACGAGAGCTGGAGGGGGATCCGGAAAGCGGCGGGGGCGCTCCGGGAGGGGTGGAGTAGGACATAGGGGGCGCACCTGGAGGAGAGACGGGGCGGGGGTGGCCAGGACCTGAGCTGGAGCCTGGGAGCCCGAAGGCCAGACAG
Seq A exon
GGCATCATCCCCGAGGAATACGTGCTGACACGCCTGGCAGAGGACCCTGCCAAGCCCAG
Seq C2 exon
CTGGCTGCTCTTCGCCATGGCCTGGTGGCTCATCGCCTTCGCCCACGGTGACCTGGCCCCCAGCGAGGGCACTGCTGAGCCCTGTGTCACCAGCATCCACTCCTTCTCGTCTGCCTTCCTTTTCTCCATTGAGGTCCAAGTGACTATTGGCTTTGGGGGGCGCATGGTGACTGAGGAGTGCCCACTGGCCATCCTGATCCTCATCGTGCAGAACATCGTGGGGCTCATGATCAACGCCATCATGCTTGGCTGCATCTTCATGAAGACTGCCCAAGCCCACCGCAGGGCTGAGACCCTCATCTTCAGCAAGCATGCGGTGATCGCCCTGCGCCACGGCCGCCTCTGCTTCATGCTACGTGTGGGTGACCTCCGCAAGAGCATGATCATCAGCGCCACCATCCACATGCAGGTGGTACGCAAGACCACCAGCCCCGAGGGCGAGGTGGTGCCCCTCCACCAGGTGGACATCCCCATGGAGAACGGCGTGGGTGGCAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187486_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0100715=IRK=WD(100=78.1)
C2:
PF0100715=IRK=WD(100=99.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTGGAGCCTGGGAG
R:
GAGTGGATGCTGGTGACACAG
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)