MmuEX1015637 @ mm10
Exon Skipping
Gene
ENSMUSG00000096146 | Kcnj11
Description
potassium inwardly rectifying channel, subfamily J, member 11 [Source:MGI Symbol;Acc:MGI:107501]
Coordinates
chr7:46098873-46100764:-
Coord C1 exon
chr7:46100628-46100764
Coord A exon
chr7:46099824-46099882
Coord C2 exon
chr7:46098873-46099652
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAGCCATGCTGTCCCGAAAGGGC
3' ss Score
2.92
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGCCTCCCACCCCCACCGCGCACGGGTCGGTGCCTGAGGACGGGCTCACAGACACACGCCAGGGAAGCCGGCCGGGAGTGAGCAACCCGGAGTGGGAGGGGGCAGGGAGGTGGCCGCTGCTTGAGCAGCACGAGCAG
Seq A exon
GGCATTATCCCTGAGGAATATGTGCTGACCCGGCTGGCAGAGGACCCTGCAGAGCCCAG
Seq C2 exon
CTGGCTGCTCTTTGCCATGGTCTGGTGGCTCATCGCCTTCGCCCACGGTGACCTGGCCCCCGGAGAGGGCACCAATGTGCCCTGCGTCACAAGCATCCACTCCTTTTCATCTGCCTTCCTTTTCTCCATCGAGGTCCAGGTGACCATTGGTTTCGGCGGGCGCATGGTGACAGAGGAATGTCCCCTGGCCATCCTCATTCTCATTGTGCAGAATATCGTCGGGCTGATGATCAACGCCATCATGCTGGGCTGCATCTTCATGAAAACGGCCCAGGCCCATCGGCGGGCAGAAACCCTCATCTTCAGCAAGCATGCTGTGATCACCCTGCGCCATGGCCGCCTGTGCTTCATGCTGCGCGTAGGGGACCTCCGAAAGAGCATGATCATTAGCGCCACCATCCACATGCAGGTGGTGCGCAAGACCACCAGCCCCGAGGGCGAAGTTGTGCCTCTCCACCAGGTAGACATCCCCATGGAGAATGGCGTGGGTGGTAACGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000096146-'0-3,'0-2,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0100715=IRK=PU(2.5=12.0)
C2:
PF0100715=IRK=WD(100=99.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGACGGGCTCACAGA
R:
CGATGAGCCACCAGACCATG
Band lengths:
139-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types