HsaEX0033012 @ hg38
Exon Skipping
Gene
ENSG00000187486 | KCNJ11
Description
potassium voltage-gated channel subfamily J member 11 [Source:HGNC Symbol;Acc:HGNC:6257]
Coordinates
chr11:17385859-17389085:-
Coord C1 exon
chr11:17388841-17389085
Coord A exon
chr11:17388018-17388076
Coord C2 exon
chr11:17385859-17387846
Length
59 bp
Sequences
Splice sites
3' ss Seq
GAGCCATGCTGTCCCGCAAGGGC
3' ss Score
2.26
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
TCGGAGTCAGCCCCGCCGGGTCGCGCGCAGGTCCGGGGAGCCGCGGTTGAGCCGGGTGGGGTGGTGACTCCAGAGAACGCAGGATCCCAAGGAGACAGAGAGGACGAGAGCTGGAGGGGGATCCGGAAAGCGGCGGGGGCGCTCCGGGAGGGGTGGAGTAGGACATAGGGGGCGCACCTGGAGGAGAGACGGGGCGGGGGTGGCCAGGACCTGAGCTGGAGCCTGGGAGCCCGAAGGCCAGACAG
Seq A exon
GGCATCATCCCCGAGGAATACGTGCTGACACGCCTGGCAGAGGACCCTGCCAAGCCCAG
Seq C2 exon
CTGGCTGCTCTTCGCCATGGCCTGGTGGCTCATCGCCTTCGCCCACGGTGACCTGGCCCCCAGCGAGGGCACTGCTGAGCCCTGTGTCACCAGCATCCACTCCTTCTCGTCTGCCTTCCTTTTCTCCATTGAGGTCCAAGTGACTATTGGCTTTGGGGGGCGCATGGTGACTGAGGAGTGCCCACTGGCCATCCTGATCCTCATCGTGCAGAACATCGTGGGGCTCATGATCAACGCCATCATGCTTGGCTGCATCTTCATGAAGACTGCCCAAGCCCACCGCAGGGCTGAGACCCTCATCTTCAGCAAGCATGCGGTGATCGCCCTGCGCCACGGCCGCCTCTGCTTCATGCTACGTGTGGGTGACCTCCGCAAGAGCATGATCATCAGCGCCACCATCCACATGCAGGTGGTACGCAAGACCACCAGCCCCGAGGGCGAGGTGGTGCCCCTCCACCAGGTGGACATCCCCATGGAGAACGGCGTGGGTGGCAACAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187486-'1-4,'1-3,2-4=AN
Average complexity
ANN
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
PF0100715=IRK=WD(100=78.1)
C2:
PF0100715=IRK=WD(100=84.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCTGGAGCCTGGGAG
R:
GAGTGGATGCTGGTGACACAG
Band lengths:
137-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development