HsaEX0033022 @ hg38
Exon Skipping
Gene
ENSG00000153822 | KCNJ16
Description
potassium voltage-gated channel subfamily J member 16 [Source:HGNC Symbol;Acc:HGNC:6262]
Coordinates
chr17:70100658-70130975:+
Coord C1 exon
chr17:70100658-70100766
Coord A exon
chr17:70108301-70108381
Coord C2 exon
chr17:70130879-70130975
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTCCTGATTTCAGACA
3' ss Score
8.82
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AATGGGGGATTGAGGCACAGAGTGTTAAAATAGTGAGACACAGGATTCTAACTGGCAGACTGGCACTTTATCTCAATTCTTAACTGCTGTGTTGCCTCTCACTTTAAAG
Seq A exon
ACATCCACATTCCACCCTGGGCCTTGCCCGTCTGGTGAGCCCAATCTCTGCTGGTCAGTCACGCAGTTGAGGTCAGGGAAG
Seq C2 exon
GAGTAACTCAAGATGATTTTGATGTTGCAGTTTTAAATTTCACTTTGACTTGAGCTGGGAAATCCTTTGGCCTATTATACCATGGATGCTAAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153822_MULTIEX1-3/5=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGGGGGATTGAGGCACAGA
R:
GCCAAAGGATTTCCCAGCTCA
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development