HsaINT1000387 @ hg38
Intron Retention
Gene
ENSG00000230258 | AC002539.1
Description
NA
Coordinates
chr17:70128069-70128859:-
Coord C1 exon
chr17:70128643-70128859
Coord A exon
chr17:70128158-70128642
Coord C2 exon
chr17:70128069-70128157
Length
485 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTATTTGTCCCCGTTTCCAGTAT
3' ss Score
9.21
Exon sequences
Seq C1 exon
CTCAGCCCGTCTGTACCCAGGCGCTCATTAGAACAGCGTGTTGCTCCACACCGCCTTGTGGTGTTTGTTACCGCGCTCTTGGGGTTCGAACCGATACAGCAGGCTTGCAGCTATTTCATTGGTTTAAACTTTTATTTTTTTATTGCAAATGAAAATTACTATCAACTATCATTACAAAGCTGTAGAATATGAAGTTCGAAGGAAAACGCTGAATCAG
Seq A exon
GTAAGGTCTATTCTGACATATAATAATGACAAAGGTAGTAAAAGCACAGCCGTTTCTTGGCTTAGAAATGACTTAGAGTTCTTTTATAGATGAGGCTAGAGAAGAGAGGCAATGCACTCAGGTTGGTGAAGCGTTTCCATCAACGTTTATTAAATACCCACAGACACTGAGGAAAGCAGCGAGAGACTCCCTGATTTACTTCATCCCACGAGGAGGTCTGAGAGAGGGGAAGTTAGAAGGGTCAGTAACCCCAACCCTGATAACCACTTTTCTCGTATCTTACTCATTGTCTTAAGCTCAGATACAGAAACATTTCTTAATCTACTGTGACCAGTAGGATCTACTTTTAGGCCTCAGCTTTCTAAATCTTTGTATTTAAGGAGAAACTTTTAATAATTTAGTACATTTCAAATAAGCTATAAACACAGCAAGGAACATTCTCAACATAACAAATGCACATCCTGCTTATTTGTCCCCGTTTCCAG
Seq C2 exon
TATACAAAAGCGTCTCAATCAGACTCATCCATTTTGAAGCAATTCCTCTGCCATTTTGCCACCTCCTCTCAAATTCAGCGACTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230258:ENST00000435112:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCCCGTCTGTACCCAG
R:
TGGTAAGTCGCTGAATTTGAGAGG
Band lengths:
305-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains