HsaEX0037511 @ hg19
Exon Skipping
Gene
ENSG00000076984 | MAP2K7
Description
mitogen-activated protein kinase kinase 7 [Source:HGNC Symbol;Acc:6847]
Coordinates
chr19:7968776-7974781:+
Coord C1 exon
chr19:7968776-7968953
Coord A exon
chr19:7969336-7969433
Coord C2 exon
chr19:7974640-7974781
Length
98 bp
Sequences
Splice sites
3' ss Seq
TACCACTCTCGTCATCTCAGGGA
3' ss Score
6.55
5' ss Seq
GAGGTTACT
5' ss Score
-0.45
Exon sequences
Seq C1 exon
CTGCCGGACTGACGGGCGGCCGGGCGGTGCGCGGCGGCGGTGGCGGCGGGGAAGATGGCGGCGTCCTCCCTGGAACAGAAGCTGTCCCGCCTGGAAGCAAAGCTGAAGCAGGAGAACCGGGAGGCCCGGCGGAGGATCGACCTCAACCTGGATATCAGCCCCCAGCGGCCCAGGCCCA
Seq A exon
GGACTGTCTGGCGCCCCCCTCCCCCGGCCTGGGGGCTTGTCAGCCCCGTGCAGCGACGATCTACGCACACGCGCACGCCTGGCTCGGGGACACCTGAG
Seq C2 exon
CCCTGCAGCTCCCGCTGGCCAACGATGGGGGCAGCCGCTCGCCATCCTCAGAGAGCTCCCCGCAGCACCCCACGCCCCCCGCCCGGCCCCGCCACATGCTGGGGCTCCCGTCAACCCTGTTCACACCCCGCAGCATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076984_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=1.000 C2=0.892
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCTGGATATCAGCCC
R:
GGGGTGTGAACAGGGTTGAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)