HsaEX0037511 @ hg38
Exon Skipping
Gene
ENSG00000076984 | MAP2K7
Description
mitogen-activated protein kinase kinase 7 [Source:HGNC Symbol;Acc:HGNC:6847]
Coordinates
chr19:7903843-7909896:+
Coord C1 exon
chr19:7903843-7904068
Coord A exon
chr19:7904451-7904548
Coord C2 exon
chr19:7909755-7909896
Length
98 bp
Sequences
Splice sites
3' ss Seq
TACCACTCTCGTCATCTCAGGGA
3' ss Score
6.55
5' ss Seq
GAGGTTACT
5' ss Score
-0.45
Exon sequences
Seq C1 exon
CGGCGGCTCGACGGGGTCATCCGGGCGCAGGCGCAGTGCGGTGTTTGTCTGCCGGACTGACGGGCGGCCGGGCGGTGCGCGGCGGCGGTGGCGGCGGGGAAGATGGCGGCGTCCTCCCTGGAACAGAAGCTGTCCCGCCTGGAAGCAAAGCTGAAGCAGGAGAACCGGGAGGCCCGGCGGAGGATCGACCTCAACCTGGATATCAGCCCCCAGCGGCCCAGGCCCA
Seq A exon
GGACTGTCTGGCGCCCCCCTCCCCCGGCCTGGGGGCTTGTCAGCCCCGTGCAGCGACGATCTACGCACACGCGCACGCCTGGCTCGGGGACACCTGAG
Seq C2 exon
CCCTGCAGCTCCCGCTGGCCAACGATGGGGGCAGCCGCTCGCCATCCTCAGAGAGCTCCCCGCAGCACCCCACGCCCCCCGCCCGGCCCCGCCACATGCTGGGGCTCCCGTCAACCCTGTTCACACCCCGCAGCATGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076984_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=1.000 C2=0.865
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACCTGGATATCAGCCC
R:
GGGGTGTGAACAGGGTTGAC
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development