HsaEX0037863 @ hg19
Exon Skipping
Gene
ENSG00000173838 | MARCH10
Description
membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:26655]
Coordinates
chr17:60865841-60885695:-
Coord C1 exon
chr17:60885438-60885695
Coord A exon
chr17:60879007-60879113
Coord C2 exon
chr17:60865841-60865960
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGTTTATCTTTTCTGTGCAGGTC
3' ss Score
10.92
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAACCGGAGGACGCCCGGTAGCCGCCCCCACCGCCTCCGCCCCAGGCAAGGCCGGCCGGCGCCGCGGAAAGCAGCCTCGGGGAAGGAGGAGGAAGAGGGGCAGGTGTAGGGAGTGAAGAAGCAAAAAGAGGAGGAGGAAGAGGAGCTCAGGGCCGTCCCCGCGCAATTAATGGGCGGCTCCTGCGCCCTGGACCGGCCCGCCCGCCCAGCCCCTCGACCCCTGTAGCCCCGGCAGGGGAGGAAGGGCAGACCCACAG
Seq A exon
GTCAGGGATTAGGAATCATGTTGCATGACGCAAGGGACAGGCAGAAGTTCTTCAGCGATGTTCAGTATCTGCGGGACATGCAGCATAAGGTGGACTCTGAGTATCAG
Seq C2 exon
GCTTGTCTGAGACGACAGGAATATAGAAGAGACCCAAATGAGAAGAAACGCGATCAGTTTTGGGGGCAAGAGACAAGTTTTGAGAGATCCCGGTTTTCTAGCAGGTCATCTTCCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173838-'0-3,'0-2,3-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.092 C2=0.750
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGAGGGGCAGGTGTAG
R:
TGTCTCTTGCCCCCAAAACTG
Band lengths:
244-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)