MmuEX6090438 @ mm10
Exon Skipping
Gene
ENSMUSG00000078627 | March10
Description
membrane-associated ring finger (C3HC4) 10 [Source:MGI Symbol;Acc:MGI:2443469]
Coordinates
chr11:105438819-105454345:-
Coord C1 exon
chr11:105454264-105454345
Coord A exon
chr11:105451076-105451182
Coord C2 exon
chr11:105438819-105438935
Length
107 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTCTCTCGAATGTAGATC
3' ss Score
9.42
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGCAGCAGGGGATCCATCTTTCTGTTTTTAACCCCATCGTTTTTTTTCTGAAAAAGGGGGAACAGACTTCATTCTATGCAG
Seq A exon
ATCAGGAACTAAGAACCATGTTGCATGAAACAAGGGACAGGCAGAAGTTCGTCAGCGATGTTCAGTATCTACGGGATATGCAGCATAAGGTGGACTCAGAATATCAG
Seq C2 exon
GCTTGTTTGAAACGACAGGAAAACAAGAAAGAACCAAATGAGAAGAAGCAGGAGCAGCTGTGGGTGAGAGATACAAGTGACAGGTCGCGGTTTTCAAGCGGGTCGTCATGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078627-'3-11,'3-8,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.672 C2=0.936
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGGGGATCCATCTTTC
R:
TTTGCATGACGACCCGCTTG
Band lengths:
194-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types