RnoEX0052698 @ rn6
Exon Skipping
Gene
ENSRNOG00000007084 | March10
Description
membrane associated ring-CH-type finger 10 [Source:RGD Symbol;Acc:1311692]
Coordinates
chr10:93663138-93679044:-
Coord C1 exon
chr10:93678963-93679044
Coord A exon
chr10:93675902-93676008
Coord C2 exon
chr10:93663138-93663254
Length
107 bp
Sequences
Splice sites
3' ss Seq
TATTTCTCTCTCGTGCGTAGATC
3' ss Score
10.32
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GAGCAGCAGGGGGTCCATCTTTCTGTTTTTAACCACATCGTTTTTTTCTGAAAAAAGGGGGAACAGACTTCATTCTATGCAG
Seq A exon
ATCAGGAACTAAGAACCATGTTGCATGAAGCAAGGGACAGGCAGAAGTTCGTCAGCGACGTTCAGTATCTACGGGACATGCAGCATAAGGTGGACTCAGAATATCAG
Seq C2 exon
GCTTGTTTGAAACGACAGGAACACAAGAAAGAACCAAACGAGAAGAAGCAGGAGCAGCTGTGGGGGAAAGACACAAGTGACAGGTCCCGGTTCTCAAGCGGGTCGTCGTGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007084-'3-18,'3-9,8-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.639 C2=0.979
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGGGGTCCATCTTTCTG
R:
CTGTTTGCACGACGACCCG
Band lengths:
195-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]