HsaEX0038734 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:65909740-65912200:-
Coord C1 exon
chr15:65912082-65912200
Coord A exon
chr15:65909916-65909986
Coord C2 exon
chr15:65909740-65909806
Length
71 bp
Sequences
Splice sites
3' ss Seq
GTATGTTCTATTCCCACTAGCAT
3' ss Score
5.58
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTTGTCTCAAAGTAGCAGCCATGCCCACTGCTTTTCCAATTCCAGCTACCACGCACTGGCATGTGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAG
Seq A exon
CATCAACCACACCATGGTGGCCTGTCATGGAACACCTAGCTCGCCCTTTCTCTCAACGGCCTAGGACCCAG
Seq C2 exon
CTCAGTAACAAGTCCCTTGACAGAGACACAGCAGGCTGGACCCCCTACAGCTATGTGAACGTGTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'46-54,'46-53,47-54
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=1.000 C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTCAAAGTAGCAGCCATG
R:
CACATAGCTGTAGGGGGTCCA
Band lengths:
173-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development