HsaEX0038737 @ hg19
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:29635]
Coordinates
chr15:66198423-66201459:-
Coord C1 exon
chr15:66201372-66201459
Coord A exon
chr15:66198963-66199008
Coord C2 exon
chr15:66198423-66198479
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGGCTACCCTCAGATA
3' ss Score
8.58
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
ATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCCACACTCACCAG
Seq A exon
ATAAGCCTTGGATCCAGGAGAGGACAGACAGGACCAGAGCTGAGAG
Seq C2 exon
GTGCTTGTGGAATGGATAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890_MULTIEX1-5/5=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.050
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCGCCCGAGGACTTCTA
R:
CTTTGAAGCCTTTGTCCATAATGT
Band lengths:
124-170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)