HsaEX0038737 @ hg38
Exon Skipping
Gene
ENSG00000157890 | MEGF11
Description
multiple EGF like domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr15:65906085-65909135:-
Coord C1 exon
chr15:65909034-65909135
Coord A exon
chr15:65906625-65906670
Coord C2 exon
chr15:65906085-65906141
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTGGCTACCCTCAGATA
3' ss Score
8.58
5' ss Seq
GAGGTGATA
5' ss Score
3.13
Exon sequences
Seq C1 exon
ACTCCCATTTCCAGATCAGTGCCCTGGAGGCCAGGTACCCGCCCGAGGACTTCTACATTGAACTTAGACACCTCAGCCGCCCCGCTGAGCCACACTCACCAG
Seq A exon
ATAAGCCTTGGATCCAGGAGAGGACAGACAGGACCAGAGCTGAGAG
Seq C2 exon
GTGCTTGTGGAATGGATAGACGTCAGAACACATACATTATGGACAAAGGCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157890-'50-59,'50-58,51-59
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.562 C2=0.142
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTTCCAGATCAGTGCCC
R:
ATGTGTTCTGACGTCTATCCATTCC
Band lengths:
132-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development