HsaEX0040966 @ hg38
Exon Skipping
Gene
ENSG00000144821 | MYH15
Description
myosin heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr3:108464638-108470847:-
Coord C1 exon
chr3:108470698-108470847
Coord A exon
chr3:108470042-108470212
Coord C2 exon
chr3:108464638-108464814
Length
171 bp
Sequences
Splice sites
3' ss Seq
ACCTATTCATATCCTTGAAGTAT
3' ss Score
3.78
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GTAACCTGTGCTGTCGGTGCCCTGTCCAAGTCAATGTATGAAAGGATGTTTAAGTGGCTAGTGGCACGGATCAACAGGGCCCTGGATGCCAAGCTGTCAAGGCAGTTCTTCATTGGCATTCTTGACATCACTGGTTTTGAAATCCTTGAG
Seq A exon
TATAATAGCCTTGAGCAACTTTGCATTAATTTTACCAATGAAAAATTACAACAATTCTTCAATTGGCACATGTTTGTTCTGGAGCAAGAGGAATATAAGAAAGAAAGCATTGAATGGGTGTCTATTGGCTTTGGTCTGGATTTGCAAGCTTGCATAGATCTCATTGAGAAG
Seq C2 exon
CCAATGGGCATCCTTTCCATCCTTGAAGAAGAGTGTATGTTTCCTAAGGCTACAGACCTGACTTTCAAGACCAAACTCTTTGACAACCATTTTGGAAAGTCGGTTCATCTCCAGAAGCCCAAGCCTGATAAGAAGAAATTTGAAGCTCATTTTGAACTTGTCCATTATGCAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144821_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCTGTCCAAGTCAATGT
R:
GGCTTCTGGAGATGAACCGAC
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development