GgaEX1066210 @ galGal3
Exon Skipping
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90804606-90806221:-
Coord C1 exon
chr1:90806072-90806221
Coord A exon
chr1:90805335-90805505
Coord C2 exon
chr1:90804606-90804785
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCTCATTTTAACTCCTGCAGTTC
3' ss Score
7.55
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTTTTGTATGCTGTTGGGGCCTTATCCAAGGCAGTGTATGATCGAATGTTCAAGTGGCTGGTGGTCCGTATCAACAAAACACTGGACACTAAGCTGCCAAGACAGTTCTTCATTGGAGTCCTGGACATTGCTGGCTTTGAAATCTTTGAT
Seq A exon
TTCAACAGCTTTGAGCAACTCTGCATCAATTACACTAATGAGAAACTGCAACAGTTTTTCAATCATCACATGTTTGTCCTCGAGCAAGAAGAATATAAAAAAGAAGGCATTGAATGGGTATTTATTGATTTTGGCATGGACCTGCAGGCCTGTATTGATCTAATTGAGAAG
Seq C2 exon
CCACTAGGAATCCTGTCTATCCTTGAAGAAGAATGTATGTTCCCAAAAGCTACAGATATGACGTTCAAAGCCAAACTTTACGACAACCATCTTGGCAAGTCACCTAACTTGCAGAAGCCCAGGCCTGATAAGAAAAGGAAATATGAAGCTCACTTTGAACTTATTCATTATGCTGGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358-'15-15,'15-14,16-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.150
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
PF0006316=Myosin_head=FE(8.2=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTATGCTGTTGGGGCCTT
R:
ACTTGCCAAGATGGTTGTCGT
Band lengths:
248-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]