MmuEX6062754 @ mm10
Exon Skipping
Gene
ENSMUSG00000092009 | Myh15
Description
myosin, heavy chain 15 [Source:MGI Symbol;Acc:MGI:3643515]
Coordinates
chr16:49100080-49109440:+
Coord C1 exon
chr16:49100080-49100229
Coord A exon
chr16:49101473-49101643
Coord C2 exon
chr16:49109264-49109440
Length
171 bp
Sequences
Splice sites
3' ss Seq
TCTTTCCTACCTATTTATAGTAT
3' ss Score
6.82
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GTAACCTATGCAGTCGGTGCACTGTCTCAGTCAATATATGAGAGGATGTTTCAGTGGCTAGTGGCACGCATGAACCAAGTCCTGGACGCCAAGCTGACAAGTCACTTCTTCGTTGGGATTCTTGACACCACTGGTTTTGAAATACTTGAT
Seq A exon
TATAATAGTCTTGAGCAACTCTGCATCAATTTTACCAATGAAAAGTTACAACAGTTTTTCAATCAGCAACTGTTTATTCTGGAGCAAGAAGAATACAGGAAAGAGGGCCTTGACTGGCTGTCCATTGACTATGGTCTGGATGTGCAAGCCTGCATAGATTTCATTGAGAAG
Seq C2 exon
CCCATGGGCATCTTTTCCATCCTTGAAGAGGAATGTATGCTTCCTAAAGCTACTGACCAGATGTTCAAGACCAAACTCTTTGACCACCATTTTGGGAAGTCAGCTTACTTCCAGACACCCACATCTCCTGAGAAGAACTTTGAAGTTCACTTTGAACTTGCTCATTATGCAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000092009-'13-22,'13-14,15-22=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
PF0006316=Myosin_head=FE(8.3=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTGCACTGTCTCAGTCAAT
R:
TGGGTGTCTGGAAGTAAGCTGA
Band lengths:
257-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types