DreEX6091843 @ danRer10
Exon Skipping
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24968219-24968925:-
Coord C1 exon
chr11:24968776-24968925
Coord A exon
chr11:24968515-24968685
Coord C2 exon
chr11:24968219-24968398
Length
171 bp
Sequences
Splice sites
3' ss Seq
CATGTGGATTCTCTCAACAGCTC
3' ss Score
8.54
5' ss Seq
AAGGTTAAA
5' ss Score
2.7
Exon sequences
Seq C1 exon
GTTAACTATGCTGTTGGAGCTCTGGCCAAAGCCACTTACGACCGCATGTTCAAGTGGTTGGTGGGGCGTATAAATAGGACGCTCTACACTGCTCTGCCACGCCAGTTCTTTATCGGAGTGCTGGACATCGCCGGCTTTGAGATCTTTGAG
Seq A exon
CTCAACAGCTTCGAGCAGCTCTGCATCAACTTCACCAATGAAAAACTGCAACAGTTTTTCAACCATCACATGTTCATCCTGGAACAAGAGGAGTACAAACGGGAAGGCATCGAGTGGACCTTTATTGACTTTGGGCTTGACCTCCAAGCCTGCATTGACCTTATTGAAAAG
Seq C2 exon
CCCTTAGGAATTATGTCCATCCTTGAAGAGGAGTGCATGTTCCCTAAAGCTACTGACAACAGCTTCAAGGCTAAGCTGTTTGACAATCACCTTGGAAAGTCGGCCAACTTCCAAAAGCCAAGGCCTGACAAGAAGAGAAAGTATGAAGCTCATTTTGAGCTGGTGCACTATGCAGGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(8.2=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGACCGCATGTTCAAGTGG
R:
TCAGGCCTTGGCTTTTGGAAG
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]