MmuEX6106235 @ mm9
Exon Skipping
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155446728-155448083:+
Coord C1 exon
chr2:155446728-155446877
Coord A exon
chr2:155447002-155447172
Coord C2 exon
chr2:155447904-155448083
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGGGGCTCTGCCACCCATAGTTT
3' ss Score
5.25
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
GTGGTATTTGCCGTGGGGGCCCTGGCCAAGGCTACCTACGACCGGTTGTTCCGATGGCTGGTTTCTCGAATCAATCAGACCCTGGACACAAAGCTCCCTCGACAGTTCTTTATCGGGGTCCTGGACATCGCTGGTTTTGAGATTTTTGAG
Seq A exon
TTTAACAGCTTCGAGCAGCTGTGCATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGTATCGACCTCATCGAGAAG
Seq C2 exon
CCTCTGGGCATCCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCTTCAGACGCAAGCTTCAGGGCCAAGCTCTATGACAATCATTCTGGGAAGTCACCTAATTTCCAGCAGCCTCGCCCAGACAAGAAACGCAAGTACCAGGCTCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-'17-15,'17-14,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(8.1=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGATGGCTGGTTTCTCGAAT
R:
TGAGCCTGGTACTTGCGTTTC
Band lengths:
252-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: