BtaEX6066270 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64898198-64900008:+
Coord C1 exon
chr13:64898198-64898347
Coord A exon
chr13:64898530-64898700
Coord C2 exon
chr13:64899829-64900008
Length
171 bp
Sequences
Splice sites
3' ss Seq
CCGGGCGCTGCCCTCTACAGTTT
3' ss Score
6.77
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTGGTGTTTGCCGTGGGGGCTCTGGCCAAGGCCACCTACGACCGGCTGTTCCGATGGCTGGTGTCTCGGATCAACCAGACGCTGGACACCAAGCTGCCCCGTCAATTCTTCATCGGCGTCCTGGACATTGCGGGTTTTGAGATCTTTGAG
Seq A exon
TTTAACAGCTTCGAACAGCTGTGTATCAACTTCACCAACGAGAAGCTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTGGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
Seq C2 exon
CCGCTGGGCATTCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCCTCGGATGCCAGCTTCCGGGCCAAGCTCTATGATAACCACGCGGGGAAGTCGCCCAATTTCCAGCAGCCACGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTTGAGGTGGTCCACTATGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
PF0006316=Myosin_head=FE(8.2=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTGGTGTCTCGGATCAA
R:
CCTGGTACTTGCGCTTCTTGT
Band lengths:
245-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]