GgaEX6022718 @ galGal4
Exon Skipping
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2956349-2957894:-
Coord C1 exon
chr20:2957745-2957894
Coord A exon
chr20:2957238-2957408
Coord C2 exon
chr20:2956349-2956528
Length
171 bp
Sequences
Splice sites
3' ss Seq
GGTTGGTTTTGTTCTTGCAGTTC
3' ss Score
7.5
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GTTGTCTATGCTGTGGGAGCCCTGGCTAAAGCCACTTACGATCGTATGTTCAAGTGGCTGGTGACTCGGATCAACAAGACCCTGGACACCAAGCTGGCCAGGCAGTTCTTCATCGGAGTACTGGACATTGCAGGCTTCGAGATCTTTGAT
Seq A exon
TTCAACAGCTTTGAACAACTGTGCATCAACTTTACTAATGAGAAGTTGCAGCAGTTCTTCAACCACCACATGTTTGTCCTGGAGCAAGAAGAATACAAGAAGGAAGGCATCGAATGGGTCTTCATTGACTTTGGCCTGGACCTACAGGCTTGCATTGACCTGATTGAGAAG
Seq C2 exon
CCTCTGGGAATCCTGTCCATCCTCGAAGAGGAGTGCATGTTCCCAAAAGCCTCCGACATGTCATTTAAAGCTAAGCTCTATGACAACCACCTTGGGAAGTCACCCAACTTCCAGAAACCCCGGCCAGATAAGAAGCGGAAATATGAGGCTCACTTTGAGCTGGTGCACTATGCTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.117
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(9.0=100)
A:
PF0006316=Myosin_head=FE(10.3=100)
C2:
PF0006316=Myosin_head=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGTGGCTGGTGACTCG
R:
TTTCCGCTTCTTATCTGGCCG
Band lengths:
244-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]