RnoEX6019882 @ rn6
Exon Skipping
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151135822-151138333:+
Coord C1 exon
chr3:151135822-151135971
Coord A exon
chr3:151136136-151136306
Coord C2 exon
chr3:151138154-151138333
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGGGGATCTGCTGCCTATAGTTT
3' ss Score
2.28
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
Exon sequences
Seq C1 exon
GTGGTATTTGCTGTGGGGGCCCTGGCCAAGGCTACCTATGACCGGTTGTTCCGATGGCTGGTATCTCGAATCAATCAGACCCTGGACACAAAGCTCCCCCGTCAGTTCTTCATTGGGGTCCTGGATATCGCTGGTTTTGAGATCTTTGAG
Seq A exon
TTTAACAGCTTCGAGCAACTGTGTATCAACTTCACCAACGAGAAACTGCAGCAGTTCTTCAACCAGCACATGTTCGTGCTGGAGCAGGAGGAGTACAAACGGGAGGGCATTGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCCTGCATCGACCTCATCGAGAAG
Seq C2 exon
CCTCTGGGCATTCTGTCCATCCTGGAGGAGGAGTGCATGTTCCCCAAGGCTTCAGACGCAAGCTTCAGGGCCAAGCTCTATGACAATCACTCTGGGAAGTCACCTAATTTCCAGCAGCCTCGCCCAGACAAGAAACGCAAGTACCAGGCTCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(8.1=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGATGGCTGGTATCTCGAA
R:
TGAGCCTGGTACTTGCGTTTC
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]