HsaEX6077845 @ hg19
Exon Skipping
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33575568-33577722:+
Coord C1 exon
chr20:33575568-33575717
Coord A exon
chr20:33575895-33576065
Coord C2 exon
chr20:33577543-33577722
Length
171 bp
Sequences
Splice sites
3' ss Seq
CAGGCCCCTCCCTCTTGTAGTTC
3' ss Score
7.56
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTGGTGTTTGCTGTGGGGGCTCTGGCCAAGGCCACCTATGACCGGCTGTTCAGGTGGCTGGTGTCTCGGATCAACCAGACCCTGGACACAAAGCTGCCCCGGCAGTTCTTCATCGGGGTTCTGGACATCGCTGGGTTTGAGATCTTTGAG
Seq A exon
TTCAACAGCTTCGAACAGCTGTGCATCAACTTCACCAATGAGAAATTGCAGCAGTTCTTCAACCAGCACATGTTTGTGCTGGAGCAGGAGGAGTACAAGCGGGAGGGCATCGACTGGGTCTTCATCGACTTCGGCCTTGACCTGCAGCCTTGCATCGACCTCATCGAGAAG
Seq C2 exon
CCACTGGGCATCCTGTCCATCCTGGAGGAGGAATGCATGTTCCCCAAGGCCTCAGACGCCAGCTTCCGGGCCAAGCTCTACGACAACCACGCGGGGAAGTCACCCAATTTCCAGCAGCCTCGGCCTGACAAGAAGCGCAAGTACCAGGCCCACTTCGAGGTGGTCCACTACGCAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-'18-18,'18-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.183
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.1=100)
A:
PF0006316=Myosin_head=FE(8.1=100)
C2:
PF0006316=Myosin_head=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACCGGCTGTTCAGGTG
R:
TACTTGCGCTTCTTGTCAGGC
Band lengths:
258-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)