HsaEX0041187 @ hg38
Exon Skipping
Gene
ENSG00000197535 | MYO5A
Description
myosin VA [Source:HGNC Symbol;Acc:HGNC:7602]
Coordinates
chr15:52376347-52379733:-
Coord C1 exon
chr15:52379625-52379733
Coord A exon
chr15:52376788-52376945
Coord C2 exon
chr15:52376347-52376558
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTGTCCCTTCAGCTT
3' ss Score
9.41
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGGACTTACCAAGAATTTTTCAGCCGCTACCGTGTCCTAATGAAGCAGAAAGATGTGCTGAGTGACAGAAAGCAAACATGCAAGAATGTGTTAGAGAAACTGATACTG
Seq A exon
CTTCTCATGGAATATACAGCCCGCTGTAATCCTTACAACCTGGGTCAGTCAGAGAGAGTCAGCATCTCCATTTCCTTGAGATGTTTAAAACACAAACAAGCAAATAATAACTGCCTATAACCCACAACCAAGTTTTGGGCCTCAGATAATAATTCCAG
Seq C2 exon
GACAAGGACAAATACCAGTTTGGTAAGACAAAGATCTTTTTCCGTGCCGGTCAAGTGGCCTATCTAGAAAAATTGAGAGCTGACAAACTGAGAGCTGCCTGCATCCGGATCCAGAAGACCATCCGAGGGTGGCTGCTGAGAAAGAAGTACCTACGCATGCGGAAGGCAGCCATCACCATGCAGAGATACGTGCGGGGCTACCAGGCCCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197535_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=PD(2.5=42.5)
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(81.0=23.9)
Main Inclusion Isoform:
ENST00000358212fB4500
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTTCAGCCGCTACCGTGT
R:
TCCGCATGCGTAGGTACTTCT
Band lengths:
257-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development