MmuEX0030518 @ mm9
Exon Skipping
Gene
ENSMUSG00000034593 | Myo5a
Description
myosin VA [Source:MGI Symbol;Acc:MGI:105976]
Coordinates
chr9:75012103-75015037:+
Coord C1 exon
chr9:75012103-75012211
Coord A exon
chr9:75014440-75014595
Coord C2 exon
chr9:75014826-75015037
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTGTTTCTTCAGCTG
3' ss Score
8.67
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGGACTTACCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAAGATGTGCTGGGAGATAGAAAGCAAACGTGCAAGAATGTATTAGAGAAACTAATATTG
Seq A exon
CTGCTCATGGAGTGTACAGCCTGATGTAATCTAACAGCGGGTCAGTCAGAGGGAGTGTCAGCATCTCCATTTCCTTGAGGTGTTTAAAATCCAAACAAGCAAATAGTAGCTGCGTAGAATCCACAACCAGTTTTGGGCCTCAGATAATAATTCCAG
Seq C2 exon
GACAAGGATAAATACCAGTTTGGTAAGACAAAGATCTTTTTCCGTGCTGGTCAAGTGGCCTATCTTGAAAAATTGAGGGCTGACAAACTTCGGGCTGCCTGCATCCGGATCCAGAAGACCATTCGTGGGTGGCTTCTAAGGAAGAGATACCTGTGTATGCAGAGGGCAGCCATCACAGTGCAGCGATACGTGCGGGGCTATCAGGCTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034593-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=PD(0.6=50.0)
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(81.0=23.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGAGTTTTTCAGCCGGT
R:
TCCTTAGAAGCCACCCACGAA
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: