RnoEX0057378 @ rn6
Exon Skipping
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82086803-82092061:+
Coord C1 exon
chr8:82086803-82086911
Coord A exon
chr8:82091459-82091614
Coord C2 exon
chr8:82091850-82092061
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGGTGTTTTTGTCTCTTCAGCTG
3' ss Score
9.31
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GTGGACTTATCAAGAGTTTTTCAGCCGGTACCGGGTCCTAATGAAGCAAAAGGATGTGCTGGGAGATAGAAAGCAAACATGCCAGAATGTATTAGAGAAACTGATACTG
Seq A exon
CTGCTCAAGGATTGTATTGCCTGATGTAATCTTACAGCGGGTCACTCAAAGGGAGTGTCAACATCTCCATTTCCTTGAGATGTTTAAAGTCCAAACAAGCAAATAGTAGCTGCATAGAACCCACAACCAGTTTGAGGCCTCAGATAATAACTCCAG
Seq C2 exon
GACAAGGATAAATACCAGTTTGGTAAGACAAAGATCTTTTTTCGTGCTGGTCAAGTGGCCTATCTAGAAAAATTGAGGGCTGACAAACTGAGGGCGGCCTGCATCCGGATCCAGAAGACGATTCGTGGGTGGCTGCTGAGGAAGAGATACCTGTGTATGCAGAGGGCAGCCATCACAGTGCAGCGATACGTGCGTGGCTATCAGGCTCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866-'25-30,'25-29,26-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
PF0006316=Myosin_head=PD(0.4=37.5)
C2:
PF0006316=Myosin_head=PD(2.1=19.7),PF0061222=IQ=WD(100=29.6),PF0061222=IQ=PU(81.0=23.9)
Main Inclusion Isoform:
ENSRNOT00000082288fB9253
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAAAGGATGTGCTGGGAG
R:
ACGTATCGCTGCACTGTGATG
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]