HsaEX0042150 @ hg19
Exon Skipping
Gene
ENSG00000163046 | NCRNA00164
Description
ankyrin repeat domain 30B-like [Source:HGNC Symbol;Acc:35167]
Coordinates
chr2:132914546-132919326:-
Coord C1 exon
chr2:132919061-132919326
Coord A exon
chr2:132914882-132914996
Coord C2 exon
chr2:132914546-132914719
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAGGCCTCTCATTCTTGTAGGAC
3' ss Score
7.49
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GGGCGAGCAGCGGGAGGCACGGGCTCTCTCTAGCAGGTGGCTGCAGCCATGGAGAGGCTCTCTGCCGCCCCTGTCAAGGGCCAGACGGGCCCAGAGCGCCCGAGCCCCTTCAGTCAGCTGGTCTACACCAACAACGACTCTTACGTGATTCACCATGGGGATCTCAGGAAGATCCACAAAGCTGCCTCCCGGGGCCAAGCCTGGAAGCTGGAGAGGATGATGAAGAAGACGACAATGGACCTGAACATAAGAGATGCGAAGAAGAG
Seq A exon
GACTGCTCTATACTGGGCCTGTGCCAATGGCCATGCAGAAGTAGTAACACTTCTGGTAGATAGAAAGTGTCAGCTTGACGTCCTTGATGGTGAAAACAGGACCATTCTGATGAAG
Seq C2 exon
GCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATTATGCTGTTAACAGTGAGAATTTGTCAGTGGTGGCAAAATTGCTGTCCTGTGGTGCAGACATCGAAGTGAAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046-'1-5,'1-4,2-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(62.5=68.5)
A:
PF127962=Ank_2=PD(36.2=74.4),PF0002325=Ank=PU(21.2=17.9)
C2:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(27.5=43.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTTCAGTCAGCTGGTCTA
R:
GGACAGCTGTGTTGCCATACA
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)