HsaEX6015556 @ hg19
Exon Skipping
Gene
ENSG00000163046 | NCRNA00164
Description
ankyrin repeat domain 30B-like [Source:HGNC Symbol;Acc:35167]
Coordinates
chr2:132912235-132914996:-
Coord C1 exon
chr2:132914882-132914996
Coord A exon
chr2:132914546-132914719
Coord C2 exon
chr2:132912235-132912341
Length
174 bp
Sequences
Splice sites
3' ss Seq
TTTTGCTTTAATACTGACAGGCT
3' ss Score
5.79
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACTGCTCTATACTGGGCCTGTGCCAATGGCCATGCAGAAGTAGTAACACTTCTGGTAGATAGAAAGTGTCAGCTTGACGTCCTTGATGGTGAAAACAGGACCATTCTGATGAAG
Seq A exon
GCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATTATGCTGTTAACAGTGAGAATTTGTCAGTGGTGGCAAAATTGCTGTCCTGTGGTGCAGACATCGAAGTGAAGAACAAG
Seq C2 exon
GCTGGCCACACACCACTTTTACTGGCCATAAGGAAAAGAAGTGAGGAAATTGTGGAATTTTTACTGACAAAAAATGCAAATGCAAATGCAGTTGATAAGTTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046-'2-6,'2-5,3-6=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(36.2=74.4),PF0002325=Ank=PU(21.2=17.9)
A:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(27.5=43.1)
C2:
PF127962=Ank_2=PD(33.3=86.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTCTATACTGGGCCTGT
R:
TGTCAGTAAAAATTCCACAATTTCCT
Band lengths:
183-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)