HsaEX0042151 @ hg19
Exon Skipping
Gene
ENSG00000163046 | NCRNA00164
Description
ankyrin repeat domain 30B-like [Source:HGNC Symbol;Acc:35167]
Coordinates
chr2:132911105-132914719:-
Coord C1 exon
chr2:132914546-132914719
Coord A exon
chr2:132912235-132912341
Coord C2 exon
chr2:132911105-132911267
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTGCTGTTTTACAGGCT
3' ss Score
10.44
5' ss Seq
ATGGTATAG
5' ss Score
2.86
Exon sequences
Seq C1 exon
GCTCTGCAATGCCAGAGGGAGGCTTGTGCAAATATTCTCATAGATTCTGGTGCTGATCCAAATATTGTAGATGTGTATGGCAACACAGCTGTCCATTATGCTGTTAACAGTGAGAATTTGTCAGTGGTGGCAAAATTGCTGTCCTGTGGTGCAGACATCGAAGTGAAGAACAAG
Seq A exon
GCTGGCCACACACCACTTTTACTGGCCATAAGGAAAAGAAGTGAGGAAATTGTGGAATTTTTACTGACAAAAAATGCAAATGCAAATGCAGTTGATAAGTTTAAATG
Seq C2 exon
CACAGCCCTCATGCTTGCCATATGTCATGGATCATCAGAGATAGTTGGCAAGCTTCTTCAGCAAAATGTTGACATCTGTGCTGAAGCTACATGTGGAATGATTGCAGAACGTTATGCTGTTGCTTGTGGATTTAATCTCTAAGTGTTTACATTTAAAGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046-'3-7,'3-6,4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0002325=Ank=PD(72.7=41.4),PF127962=Ank_2=PU(27.5=43.1)
A:
PF127962=Ank_2=PD(33.3=86.1)
C2:
PF127962=Ank_2=PD(31.9=60.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGGAGGCTTGTGCAAAT
R:
CCACATGTAGCTTCAGCACAGA
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)