HsaEX0042152 @ hg19
Exon Skipping
Gene
ENSG00000163046 | NCRNA00164
Description
ankyrin repeat domain 30B-like [Source:HGNC Symbol;Acc:35167]
Coordinates
chr2:132905164-132912341:-
Coord C1 exon
chr2:132912235-132912341
Coord A exon
chr2:132908485-132908549
Coord C2 exon
chr2:132905164-132905801
Length
65 bp
Sequences
Splice sites
3' ss Seq
TATTTCATTTTTATACATAGCGT
3' ss Score
6.29
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCTGGCCACACACCACTTTTACTGGCCATAAGGAAAAGAAGTGAGGAAATTGTGGAATTTTTACTGACAAAAAATGCAAATGCAAATGCAGTTGATAAGTTTAAATG
Seq A exon
CGTTCATCAACAACTTTTGGAATATAAACAAAAGATATCTAAAAATTCTCAAAATAGTAATCCAG
Seq C2 exon
AAGGAACATCTGAAGGAACACCTGATGAGGCTGCACCCTTGGCGGAAAGAACACCTGACACGGCTGAAAGCTTGGTGGAAAGAACACCTGATGAATAGGATACAGTGAATTCCTCTTCAAAGATTTTAGCCTGTAAACATCCTTTAAAATTCAAGAGGGGGAAGATTAAGTACAATGAGTTCTGAGTTCCTCATCAAAGAACAAATATGTCAGTATGTTCAGCTTCTCTGTTCTTTGTTCTCCGTTTTAAAGTTTAACTTCCTCGTTCGTTATGCCTCCTTGCCCCTAGTTTCATTAAACAGCCCCCTTCTAGCCTCTAACACCTGCTTTGTCTTTAGTCATTCTTAGTAACCTGCTCTGTCCTTAGTCATCCTTAGACACCTGCTCTGTAACTGTCTTTCCCGCTGAAACTACTCACCCTGCCACTCCAGCTCATACCCCTGCCCTCTTTAAATAGCCAATCTGAATTGGCTTAGAGTGTGCAGTCCAACCCTATCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163046-'4-10,'4-9,9-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.267 C2=0.478
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(33.3=86.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCACACACCACTTTTA
R:
TTTCAGCCGTGTCAGGTGTTC
Band lengths:
176-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)