HsaEX0043737 @ hg19
Exon Skipping
Gene
ENSG00000148200 | NR6A1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:HGNC Symbol;Acc:7985]
Coordinates
chr9:127316607-127495628:-
Coord C1 exon
chr9:127495587-127495628
Coord A exon
chr9:127480062-127480106
Coord C2 exon
chr9:127316607-127316849
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGCCCCATTTTACAGATG
3' ss Score
11.26
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTCTGTCAGGATGAATTGGCAGAGCTTGACCCAGGCACTA
Seq A exon
ATGAGGAAACTGACAGTTTAACACTTGGCCAAGGTCACACAGCTG
Seq C2 exon
TTTCTGTTTCAGATGATCGGGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGCGCTACAGGCTTGCACTATGGGATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTATATCGATGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148200-'1-4,'1-2,2-4
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=1.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=WD(100=85.4)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCAGAGCTTGACCCAG
R:
TGCTCCGCTTGAAAAACCCTT
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)