MmuEX0032290 @ mm10
Exon Skipping
Gene
ENSMUSG00000063972 | Nr6a1
Description
nuclear receptor subfamily 6, group A, member 1 [Source:MGI Symbol;Acc:MGI:1352459]
Coordinates
chr2:38760187-38885237:-
Coord C1 exon
chr2:38885196-38885237
Coord A exon
chr2:38872595-38872639
Coord C2 exon
chr2:38760187-38760429
Length
45 bp
Sequences
Splice sites
3' ss Seq
TAGTTCTTTTTGCTTTGCAGATG
3' ss Score
9.29
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTA
Seq A exon
ATGGAGAGACTGACAGTTTAACACTTGGCCAAGGCCATATACCTG
Seq C2 exon
TTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGCTTGCACTATGGGATCATCTCCTGCGAGGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGGGCATGAACAGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063972-'6-19,'6-7,7-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=1.000 C2=0.035
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=WD(100=85.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCAGAGCTTGATCCAGG
R:
CTTGAAAAACCCCTTGCAGCC
Band lengths:
139-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types