HsaEX0043737 @ hg38
Exon Skipping
Gene
ENSG00000148200 | NR6A1
Description
nuclear receptor subfamily 6 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr9:124554328-124733349:-
Coord C1 exon
chr9:124733308-124733349
Coord A exon
chr9:124717783-124717827
Coord C2 exon
chr9:124554328-124554570
Length
45 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGCCCCATTTTACAGATG
3' ss Score
11.26
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GTTTCTGTCAGGATGAATTGGCAGAGCTTGACCCAGGCACTA
Seq A exon
ATGAGGAAACTGACAGTTTAACACTTGGCCAAGGTCACACAGCTG
Seq C2 exon
TTTCTGTTTCAGATGATCGGGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGCGCTACAGGCTTGCACTATGGGATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTATATCGATGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148200_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=1.000 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0010513=zf-C4=WD(100=85.4)
Main Inclusion Isoform:
ENST00000373584fB4754
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCAGAGCTTGACCCAG
R:
TGCTCCGCTTGAAAAACCCTT
Band lengths:
147-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development